Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs34392658 chr3:170091584 C/T 0.000151 178 7.67 15.13 15.97 KM Plot
PAAD rs34397130 chr1:227358155 C/CA 5.77E-5 172 15.53 15.65 3.9 KM Plot
PAAD rs34565494 chr16:68741769 C/T 6.39E-5 175 16.15 14.18 5.97 KM Plot
PAAD rs34592833 chr16:68739125 G/A 2.92E-5 173 16.6 14.18 5.97 KM Plot
PAAD rs34679719 chr6:45037599 GA/G 0.000121 173 16.37 15.77 11.77 KM Plot
PAAD rs34717435 chr1:227373463 T/TC 3.69E-5 177 15.53 15.43 3.9 KM Plot
PAAD rs34762107 chr5:140525324 T/C 1.72E-5 177 15.95 14.33 7.85 KM Plot
PAAD rs34851859 chr2:217930492 T/C 2.53E-5 177 15.37 17.37 5.97 KM Plot
PAAD rs34876741 chr11:125578320 TG/T 0.000112 177 16.08 14.18 5.03 KM Plot
PAAD rs34928550 chr3:39052344 C/A 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs34964399 chr2:128535327 CAT/C 7.9E-10 178 15.62 12.6 2.2 KM Plot
PAAD rs35114380 chr3:39099906 A/G 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs35211706 chr2:179033605 A/G 5.93E-10 178 15.95 13.07 2.2 KM Plot
PAAD rs35211723 chr3:39100096 T/C 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs35234350 chr21:48071132 TG/T 5.34E-5 176 7.47 15.62 15.4 KM Plot